SNP Profiles matching EET 390

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 Key

 1234567891011121314
_Input profile
CCAACGCCCTACCTGGTTCTAAAGCCAA
1._EET_390_[ECU]
CCAACGCCCTACCTGGTTCTAAAGCCAA
2._EET_390_[ECU]
CCAACGCCCTACCTGGTTCTAAAGCCAA
3._EET_390_[ECU]
CCAACGCCCTACCTGGTTCTAAAGCCAA
4._EET_390_[ECU]
CCAACGCCCTACCTGGTTCTAAAGCCAA
5._EET_45_[ECU]
CCAACGCCCTACCTGGTTCTAAAGCCAA
6._EET_45_[ECU]
CCAACGCCCTACCTGGTTCTAAAGCCAA
7._EET_45_[ECU]
CCAACGCCCTACCTGGTTCTAAAGCCAA
8._EET_45_[ECU]
CCAACGCCCTACCTGGTTCTAAAGCCAA
9._EET_45_[ECU]
CCAACGCCCTACCTGGTTCTAAAGCCAA
10._EET_45_[ECU]
CCAACGCCCTACCTGGTTCTAAAGCCAA
11._GC-01-035-2-12
CCAACGCCCTACCTGGTTCTAAAGCCAA
12._GC-01-035-2-12
CCAACGCCCTACCTGGTTCTAAAGCCAA
13._GC-01-035-2-12
CCAACGCCCTACCTGGTTCTAAAGCCAA
14._GC-01-035-2-12
CCAACGCCCTACCTGGTTCTAAAGCCAA
15._GC-01-035-2-12
CCAACGCCCTACCTGGTTCTAAAGCCAA
16._GC-03-017-2-06
CCAACGCCCTACCTGGTTCTAAAGCCAA
17._GC-04-057-4-08
CCAACGCCCTACCTGGTTCTAAAGCCAA
18._GC-04-057-4-08
CCAACGCCCTACCTGGTTCTAAAGCCAA
19._GC-04-057-4-08
CCAACGCCCTACCTGGTTCTAAAGCCAA
20._GC-04-058-4-09
CCAACGCCCTACCTGGTTCTAAAGCCAA
21._GC-04-058-4-09
CCAACGCCCTACCTGGTTCTAAAGCCAA
22._EET_45_[ECU]
_AACGCCCTACCTGGTTCTAAAGCCAA
23._EET_45_[ECU]
CCAACGCCCTACCTGGTTCTAAAGCCAA
24._GC-04-057-4-08
CCAACGCCCTACCTGGTTCTAAAGCCAA
25._GC-04-057-4-08
_AACGCCCTACCTGGTTCTAAAGCCAA
26._EET_45_[ECU]
CCAACGCTCTCCCTGGTT_AAAGCCAA
27._EET_390_[ECU]
CC_CGCTCTCCCTGGTT_AAAGCCAA
28._EET_45_[ECU]
CCAACGCTCTCCCTGGTT_AAAGCCAA
 1516171819202122232425262728
_Input profile
CTTTCGCTCTCGGTAATTCCCGGGCTAA
1._EET_390_[ECU]
CTTTCGCTCTCGGTAATTCCCGGGCTAA
2._EET_390_[ECU]
CTTTCGCTCTCGGTAATTCCCGGGCTAA
3._EET_390_[ECU]
CTTTCGCTCTCGGTAATTCCCGGGCTAA
4._EET_390_[ECU]
CTTTCGCTCTCGGTAATTCCCGGGCTAA
5._EET_45_[ECU]
CTTTCGCTCTCGGTAATTCCCGGGCTAA
6._EET_45_[ECU]
CTTTCGCTCTCGGTAATTCCCGGGCTAA
7._EET_45_[ECU]
CTTTCGCTCTCGGTAATTCCCGGGCTAA
8._EET_45_[ECU]
CTTTCGCTCTCGGTAATTCCCGGGCTAA
9._EET_45_[ECU]
CTTTCGCTCTCGGTAATTCCCGGGCTAA
10._EET_45_[ECU]
CTTTCGCTCTCGGTAATTCCCGGGCTAA
11._GC-01-035-2-12
CTTTCGCTCTCGGTAATTCCCGGGCTAA
12._GC-01-035-2-12
CTTTCGCTCTCGGTAATTCCCGGGCTAA
13._GC-01-035-2-12
CTTTCGCTCTCGGTAATTCCCGGGCTAA
14._GC-01-035-2-12
CTTTCGCTCTCGGTAATTCCCGGGCTAA
15._GC-01-035-2-12
CTTTCGCTCTCGGTAATTCCCGGGCTAA
16._GC-03-017-2-06
CTTTCGCTCTCGGTAATTCCCGGGCTAA
17._GC-04-057-4-08
CTTTCGCTCTCGGTAATTCCCGGGCTAA
18._GC-04-057-4-08
CTTTCGCTCTCGGTAATTCCCGGGCTAA
19._GC-04-057-4-08
CTTTCGCTCTCGGTAATTCCCGGGCTAA
20._GC-04-058-4-09
CTTTCGCTCTCGGTAATTCCCGGGCTAA
21._GC-04-058-4-09
CTTTCGCTCTCGGTAATTCCCGGGCTAA
22._EET_45_[ECU]
CTTTCGCTCTCGGTAATTCCCGGGCTAA
23._EET_45_[ECU]
CTTTCGCTCTCGGTAATTCCCGGGCTAA
24._GC-04-057-4-08
CTTTCGCTCTCGGTAATTCCCGGGCTAA
25._GC-04-057-4-08
CTTTCGCTCTCGGTAATTCCCGGGCTAA
26._EET_45_[ECU]
CTTTCGCTCTCGGTAGTTCCCGGGCTAA
27._EET_390_[ECU]
CTTTCGCTCTCGGTAGTT_CGGGCTAA
28._EET_45_[ECU]
CTTTCGCTCTCGGTAGTTAACGGGCTAA
 293031323334353637383940  
_Input profile
GGAAAACCAGCCCCCTGTCCAACGX_XX_X
1._EET_390_[ECU]
GGAAAACCAGCCCCCTGTCCAACGX_XX_X
2._EET_390_[ECU]
GGAAAACCAGCCCCCTGTCCAACGX_XX_X
3._EET_390_[ECU]
GGAAAACCAGCCCCCTGTCCAACGX_XX_X
4._EET_390_[ECU]
GGAAAACCAGCCCCCTGTCCAACGX_XX_X
5._EET_45_[ECU]
GGAAAACCAGCCCCCTGTCCAACGX_XX_X
6._EET_45_[ECU]
GGAAAACCAGCCCCCTGTCCAACGX_XX_X
7._EET_45_[ECU]
GGAAAACCAGCCCCCTGTCCAACGX_XX_X
8._EET_45_[ECU]
GGAAAACCAGCCCCCTGTCCAACGX_XX_X
9._EET_45_[ECU]
GGAAAACCAGCCCCCTGTCCAACGX_XX_X
10._EET_45_[ECU]
GGAAAACCAGCCCCCTGTCCAACGX_XX_X
11._GC-01-035-2-12
GGAAAACCAGCCCCCTGTCCAACGX_XX_X
12._GC-01-035-2-12
GGAAAACCAGCCCCCTGTCCAACGX_XX_X
13._GC-01-035-2-12
GGAAAACCAGCCCCCTGTCCAACGX_XX_X
14._GC-01-035-2-12
GGAAAACCAGCCCCCTGTCCAACGX_XX_X
15._GC-01-035-2-12
GGAAAACCAGCCCCCTGTCCAACGX_XX_X
16._GC-03-017-2-06
GGAAAACCAGCCCCCTGTCCAACGX_XX_X
17._GC-04-057-4-08
GGAAAACCAGCCCCCTGTCCAACGX_XX_X
18._GC-04-057-4-08
GGAAAACCAGCCCCCTGTCCAACGX_XX_X
19._GC-04-057-4-08
GGAAAACCAGCCCCCTGTCCAACGX_XX_X
20._GC-04-058-4-09
GGAAAACCAGCCCCCTGTCCAACGX_XX_X
21._GC-04-058-4-09
GGAAAACCAGCCCCCTGTCCAACGX_XX_X
22._EET_45_[ECU]
GGAAAACCAGCCCCCTGTCCAACGX_XX_X
23._EET_45_[ECU]
GGAAAACCAGCCCC_GTCCAACGX_XX_X
24._GC-04-057-4-08
GGAAAACCAGCCCC_GTCCAACGX_XX_X
25._GC-04-057-4-08
GGAAAACCAGCCCCCTGTCCAACGX_XX_X
26._EET_45_[ECU]
GG_AACCAG_CC_GTCCAACGX_XX_X
27._EET_390_[ECU]
GG__CCAG_CC_GTCCAACGX_XX_X
28._EET_45_[ECU]
GG_AACCAGCCCCCTGTCCAACGX_XX_X

Input profile: EET_390_[ECU]

 
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Mars Center for Cocoa Science, Brazil
Location: 1210a 4 > FP
 Dapeng Zhang, 2016

1._EET_390_[ECU]

identical
40 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 1210a 6 > FP
 Dapeng Zhang, 2016

2._EET_390_[ECU]

identical
40 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 1210a 1 > FP
 Dapeng Zhang, 2016

3._EET_390_[ECU]

identical
40 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 1210a 8
 Dapeng Zhang, 2016

4._EET_390_[ECU]

identical
40 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 1210a 3
 Dapeng Zhang, 2016
Population Assignment: 
View Data
 Dapeng Zhang, 2016

5._EET_45_[ECU]

identical
40 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 4409 8
 Dapeng Zhang, 2016

6._EET_45_[ECU]

identical
40 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 4409 6
 Dapeng Zhang, 2016

7._EET_45_[ECU]

identical
40 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 4408 7
 Dapeng Zhang, 2016

8._EET_45_[ECU]

identical
40 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 4408 2
 Dapeng Zhang, 2016

9._EET_45_[ECU]

identical
40 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 4408 1
 Dapeng Zhang, 2016

10._EET_45_[ECU]

identical
40 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 3206 1 > FP
 Dapeng Zhang, 2016
Population Assignment: 
View Data
 Dapeng Zhang, 2016

11._EET_390_[ECU] GC-01-035-2-12

identical
40 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 1
Notes: 1 > FP1
 Mars, 2018

12._EET_390_[ECU] GC-01-035-2-12

identical
40 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 3
Notes: 3
 Mars, 2018

13._EET_390_[ECU] GC-01-035-2-12

identical
40 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 4
Notes: 4 > FP2
 Mars, 2018

14._EET_390_[ECU] GC-01-035-2-12

identical
40 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 6
Notes: 6 > FP3
 Mars, 2018

15._EET_390_[ECU] GC-01-035-2-12

identical
40 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 8
Notes: 8
 Mars, 2018

16._EET_45_[ECU] GC-03-017-2-06

identical
40 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 1
Notes: 1 > FP1
 Mars, 2018

17._EET_45_[ECU] GC-04-057-4-08

identical
40 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 1
Notes: 1
 Mars, 2018

18._EET_45_[ECU] GC-04-057-4-08

identical
40 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 2
Notes: 2
 Mars, 2018

19._EET_45_[ECU] GC-04-057-4-08

identical
40 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 7
Notes: 7
 Mars, 2018

20._EET_45_[ECU] GC-04-058-4-09

identical
40 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 6
Notes: 6
 Mars, 2018

21._EET_45_[ECU] GC-04-058-4-09

identical
40 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 8
Notes: 8
 Mars, 2018

22._EET_45_[ECU]

identical
39 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 4408 8
 Dapeng Zhang, 2016

23._EET_45_[ECU]

identical
39 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 4408 5
 Dapeng Zhang, 2016

24._EET_45_[ECU] GC-04-057-4-08

identical
39 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 5
Notes: 5
 Mars, 2018

25._EET_45_[ECU] GC-04-057-4-08

identical
39 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 8
Notes: 8
 Mars, 2018

26._EET_45_[ECU]

95.8 %
36 shared markers

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Centro Agronómico Tropical de Investigación y Enseñanza (CATIE), Costa Rica
Location: Cabiria
 Dapeng Zhang, 2016

27._EET_390_[ECU]

95.5 %
33 shared markers

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Centro Agronómico Tropical de Investigación y Enseñanza (CATIE), Costa Rica
Location: La Montaña Lot 6 Row 37 46-48
 Dapeng Zhang, 2016

28._EET_45_[ECU]

93.4 %
38 shared markers

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Centro Agronómico Tropical de Investigación y Enseñanza (CATIE), Costa Rica
Location: La Montaña Lot 6 Row 33 34_36
 Dapeng Zhang, 2016

 

  Key to SNP Markers

1TcSNP1520 2TcSNP1484 3TcSNP1458 4TcSNP1442 5TcSNP1414
6TcSNP1350 7TcSNP1270 8TcSNP1253 9TcSNP1165 10TcSNP1144
11TcSNP1075 12TcSNP1062 13TcSNP1060 14TcSNP998 15TcSNP994
16TcSNP953 17TcSNP929 18TcSNP917 19TcSNP891 20TcSNP872
21TcSNP723 22TcSNP645 23TcSNP619 24TcSNP591 25TcSNP577
26TcSNP560 27TcSNP534 28TcSNP529 29TcSNP469 30TcSNP429
31TcSNP372 32TcSNP242 33TcSNP230 34TcSNP226 35TcSNP193
36TcSNP151 37TcSNP150 38TcSNP144 39TcSNP32 40TcSNP25